PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04944.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 59aa    MW: 6698.6 Da    PI: 8.5111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04944.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-061438226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             ++++C+ +++ G C++  rC+ +H 
  Rsa1.0_04944.1_g00002.1 14 DRVNCPVYFKIGACRHDTRCSSSHN 38
                             689*********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.2441240IPR000571Zinc finger, CCCH-type
PRINTSPR018485.0E-161837IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.0E-163757IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MAEHLASTFG TEKDRVNCPV YFKIGACRHD TRCSSSHNRP TISSTLLLSN LYQRPDQML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A7e-19155155Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145565.18e-29PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_008453027.18e-29PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_009417288.11e-29PREDICTED: LOW QUALITY PROTEIN: splicing factor U2af small subunit A-like
RefseqXP_010270687.13e-30PREDICTED: splicing factor U2af small subunit A, partial
SwissprotQ9FMY55e-30U2AFB_ARATH; Splicing factor U2af small subunit B
SwissprotQ9S7095e-30U2AFA_ARATH; Splicing factor U2af small subunit A
TrEMBLA0A0A0L4P88e-29A0A0A0L4P8_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s00480.13e-28(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2112344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.18e-25C3H family protein